species:   Artha
pid:       MI0010631
parent:    ath-MIR2111b
paralog:   
locus:     5:400358-400524
matures:   ['UAAUCUGCAUCCUGAGGUUUA', 'AUCCUCGGGAUACAGUUUACC']
srr:       SRR9216050
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram 5:400358-400524

0 out of bounds
5 alignments
5 proper strand
4 stranded perfect matches

                                          ***********************                                       ***********************                                        
CAACAACACGAAGAAGAAGAUGAAGGUACUUGAUGAUGAACGGGUAAUCUGCAUCCUGAGGUUUAAAACCAAUUAAGCAUAUACAUAUGCGAAUGUAUAGUUUUUAAUCCUCGGGAUACAGUUUACCUCUUCCUUACUCAAGAAAACACUUAGCUUUAACGGUUUUG
....(((.((..((((......(((((.((((((((.(((.((((((.(((.(((((((((.((((((........((.(((((((......))))))))))))))).))))))))).))).)))))).))).))).)))))...)).)))..))))..)))))...
--------------------------------------------UAAUCUGCAUCCUGAGGUUUA------------------------------------------------------------------------------------------------------ l=21 a=1 c
----------------------------------------------------------------------------------------------------------AUCCUCGGGAUACAGUUUACC---------------------------------------- l=21 a=1 c*
--------------------------------------------UAAUCUGCAUCCUGAGGUUUA------------------------------------------------------------------------------------------------------ l=21 a=1 ma
----------------------------------------------------------------------------------------------------------AUCCUCGGGAUACAGUUUACC---------------------------------------- l=21 a=1 ma*

--------------------------------------------UAAUCUGCAUCCUGAGGU--------------------------------------------------------------------------------------------------------- l=18 a=1 
--------------------------------------------UAAUCUGCAUCCUGAGGUUUA------------------------------------------------------------------------------------------------------ l=21 a=1 (c,ma)
---------------------------------------------------------------------------------------------------------AAUCCUCGGGAUACAGUUUACu---------------------------------------- l=22 a=1 
---------------------------------------------------------------------------------------------------------AAUCCUCGGGAUACAGUUUACC---------------------------------------- l=22 a=1 
----------------------------------------------------------------------------------------------------------AUCCUCGGGAUACAGUUUACC---------------------------------------- l=21 a=1 (c*,ma*)

mb-01111
ax-1111011
ku-01
ss-100111111111
fn-011
